Package: ZarrDataFrame 0.0.0

Artur Manukyan

ZarrDataFrame: Bioconductor-friendly Bindings for Zarr

Implements bindings for zarr store that are compatible with Bioconductor S4 data structures, namely the DataFrame and DelayedArray. This allows Zarr-backed data to be easily used as data frames with arbitrary sets of columns

Authors:Artur Manukyan [aut, cre]

ZarrDataFrame_0.0.0.tar.gz
ZarrDataFrame_0.0.0.zip(r-4.7)ZarrDataFrame_0.0.0.zip(r-4.6)ZarrDataFrame_0.0.0.zip(r-4.5)
ZarrDataFrame_0.0.0.tgz(r-4.6-any)ZarrDataFrame_0.0.0.tgz(r-4.5-any)
ZarrDataFrame_0.0.0.tar.gz(r-4.7-any)ZarrDataFrame_0.0.0.tar.gz(r-4.6-any)
ZarrDataFrame_0.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ZarrDataFrame/json (API)

# Install 'ZarrDataFrame' in R:
install.packages('ZarrDataFrame', repos = c('https://bimsbbioinfo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bimsbbioinfo/zarrdataframe/issues

On CRAN:

Conda:

datarepresentationinfrastructuresoftware

2.78 score 2 packages 1 scripts 14 exports 40 dependencies

Last updated from:f5f6715219. Checks:7 ERROR, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR211
source / vignettesOK240
linux-release-x86_64ERROR207
macos-release-arm64ERROR122
macos-oldrel-arm64ERROR127
windows-develERROR155
windows-releaseERROR155
windows-oldrelERROR168
wasm-releaseOK113

Exports:DelayedArrayextract_arrayextractCOLSextractROWSnormalizeSingleBracketReplacementValueopen_zarrpathreplaceCOLSreplaceROWStypeZarrColumnSeedZarrColumnVectorzarrcreateGroupZarrDataFrame

Dependencies:abindaskpassbase64encBiocGenericsclicurlDelayedArraydigestgenericsgluegrumpyhttr2IRangesjsonlitelatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsopensslpaws.commonpaws.storageR.methodsS3R.ooR.utilsR6rappdirsRarrRcpprlangS4ArraysS4VectorsSparseArraysysvctrswithrxml2XVectorZarrArray

Readme and manuals

Help Manual

Help pageTopics
open_zarropen_zarr
Column of an Zarr-based data frameDelayedArray,ZarrColumnSeed-method dim,ZarrColumnSeed-method extract_array,ZarrColumnSeed-method path,ZarrColumnSeed-method type,ZarrColumnSeed-method ZarrColumnSeed ZarrColumnSeed-class ZarrColumnVector ZarrColumnVector-class
zarrcreateGroupzarrcreateGroup
Zarr-backed DataFrameas.data.frame,ZarrDataFrame-method cbind,ZarrDataFrame-method cbind.ZarrDataFrame coerce,ZarrDataFrame,DFrame-method extractCOLS,ZarrDataFrame-method extractROWS,ZarrDataFrame,ANY-method length,ZarrDataFrame-method names,ZarrDataFrame-method names<-,ZarrDataFrame-method ncol,ZarrDataFrame-method normalizeSingleBracketReplacementValue,ZarrDataFrame-method nrow,ZarrDataFrame-method path,ZarrDataFrame-method replaceCOLS,ZarrDataFrame-method replaceROWS,ZarrDataFrame-method rownames,ZarrDataFrame-method rownames<-,ZarrDataFrame-method ZarrDataFrame ZarrDataFrame-class [[,ZarrDataFrame-method [[<-,ZarrDataFrame-method