Package: HDF5DataFrame 0.99.3

Artür Manukyan

HDF5DataFrame: HDF5-backed DataFrame objects and methods

HDF5DataFrame is an R/Bioconductor package for HDF5-backed DataFrame objects and methods. This allows HDF5-backed data to be easily used as data frames with arbitrary sets of columns.

Authors:Artür Manukyan [aut, cre, fnd]

HDF5DataFrame_0.99.3.tar.gz
HDF5DataFrame_0.99.3.zip(r-4.7)HDF5DataFrame_0.99.3.zip(r-4.6)HDF5DataFrame_0.99.3.zip(r-4.5)
HDF5DataFrame_0.99.3.tgz(r-4.6-any)HDF5DataFrame_0.99.3.tgz(r-4.5-any)
HDF5DataFrame_0.99.3.tar.gz(r-4.7-any)HDF5DataFrame_0.99.3.tar.gz(r-4.6-any)
HDF5DataFrame_0.99.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
HDF5DataFrame/json (API)

# Install 'HDF5DataFrame' in R:

install.packages('HDF5DataFrame', repos = c('https://bimsbbioinfo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bimsbbioinfo/hdf5dataframe/issues

On CRAN:

datarepresentation infrastructure software

4.08 score 1 stars 2 packages 1 scripts 12 exports 21 dependencies

Last updated from:61c52cb4ee. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	227
source / vignettes	OK	224
linux-release-x86_64	OK	215
macos-release-arm64	OK	156
macos-oldrel-arm64	OK	171
windows-devel	OK	160
windows-release	OK	170
windows-oldrel	OK	167
wasm-release	OK	127

Exports:DelayedArray extract_array extractCOLS extractROWS HDF5ColumnSeed HDF5ColumnVector HDF5DataFrame path replaceCOLS replaceROWS type writeHDF5DataFrame

Dependencies:abind BiocGenerics biocmake DelayedArray dir.expiry filelock generics h5mread HDF5Array IRanges lattice Matrix MatrixGenerics matrixStats rhdf5 rhdf5filters Rhdf5lib S4Arrays S4Vectors SparseArray XVector

HDF5DataFrame

Introduction | Installation | HDF5DataFrame Methods | Coercion | Session info

Rendered fromHDF5DataFrame.Rmdusingknitr::rmarkdown

Last update: 2025-11-22
Started: 2025-05-02

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
HDF5ColumnSeed	DelayedArray,HDF5ColumnSeed-method dim,HDF5ColumnSeed-method extract_array,HDF5ColumnSeed-method HDF5ColumnSeed HDF5ColumnVector path,HDF5ColumnSeed-method type,HDF5ColumnSeed-method
HDF5ColumnSeed Class	HDF5ColumnSeed-class
HDF5ColumnVector Class	HDF5ColumnVector-class
HDF5-backed DataFrame	as.data.frame,HDF5DataFrame-method cbind,HDF5DataFrame-method HDF5DataFrame length,HDF5DataFrame-method names,HDF5DataFrame-method names<-,HDF5DataFrame-method nrow,HDF5DataFrame-method path,HDF5DataFrame-method rownames,HDF5DataFrame-method rownames<-,HDF5DataFrame-method [[,HDF5DataFrame-method [[<-,HDF5DataFrame-method
HDF5DataFrame Class	HDF5DataFrame-class
subsetting-utils	extractCOLS,HDF5DataFrame,ANY-method extractCOLS,HDF5DataFrame-method extractROWS,HDF5DataFrame,ANY-method replaceCOLS,HDF5DataFrame,ANY-method replaceCOLS,HDF5DataFrame-method replaceROWS,HDF5DataFrame,ANY-method replaceROWS,HDF5DataFrame-method subsetting-utils
writeHDF5DataFrame	writeHDF5DataFrame