{
  "_id": "6aca4b3ffe5cc25786e86bd5",
  "Package": "HDF5DataFrame",
  "Version": "0.99.3",
  "Date": "2026-01-20",
  "Title": "HDF5-backed DataFrame objects and methods",
  "Description": "HDF5DataFrame is an R/Bioconductor package for HDF5-backed\nDataFrame objects and methods. This allows HDF5-backed data to\nbe easily used as data frames with arbitrary sets of columns.",
  "Authors@R": "person(\"Artür\", \"Manukyan\",\nrole=c(\"aut\", \"cre\", \"fnd\"),\nemail=\"artur-man@hotmail.com\",\ncomment=c(ORCID=\"0000-0002-0441-9517\"))",
  "License": "MIT + file LICENSE",
  "biocViews": "DataRepresentation, Infrastructure, Software",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.3.3",
  "Encoding": "UTF-8",
  "URL": "https://github.com/BIMSBbioinfo/HDF5DataFrame",
  "BugReports": "https://github.com/BIMSBbioinfo/HDF5DataFrame/issues",
  "Config/pak/sysreqs": "libssl-dev zlib1g-dev",
  "Repository": "https://bimsbbioinfo.r-universe.dev",
  "Date/Publication": "2026-01-20 21:36:55 UTC",
  "RemoteUrl": "https://github.com/BIMSBbioinfo/HDF5DataFrame",
  "RemoteRef": "HEAD",
  "RemoteSha": "61c52cb4ee940e623363ac7fdaa67766ed6947fa",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-10 14:07:21 UTC",
    "User": "root"
  },
  "Author": "Artür Manukyan [aut, cre, fnd] (ORCID:\n<https://orcid.org/0000-0002-0441-9517>)",
  "Maintainer": "Artür Manukyan <artur-man@hotmail.com>",
  "_user": "bimsbbioinfo",
  "_type": "src",
  "_file": "HDF5DataFrame_0.99.3.tar.gz",
  "_fileid": "https://r2.ropensci.org/5245fad48f7142ba6a74898556c9f4edea6e339582f8e6966b041d828a7a95a3",
  "_filesize": 117187,
  "_sha256": "5245fad48f7142ba6a74898556c9f4edea6e339582f8e6966b041d828a7a95a3",
  "_expires": "2027-01-18T14:27:06.000Z",
  "_created": "2026-10-10T14:07:21.000Z",
  "_published": "2026-10-10T14:27:11.572Z",
  "_buildurl": "https://github.com/r-universe/bimsbbioinfo/actions/runs/38058004286",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 114231453413,
      "time": 204,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11672585452"
    },
    {
      "job": 114231453378,
      "time": 201,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11672700271"
    },
    {
      "job": 114231453379,
      "time": 165,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11672282504"
    },
    {
      "job": 114231453423,
      "time": 157,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11672796975"
    },
    {
      "job": 114230619977,
      "time": 203,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11672560188"
    },
    {
      "job": 114231453347,
      "time": 106,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11672200940"
    },
    {
      "job": 114231453434,
      "time": 127,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11672755193"
    },
    {
      "job": 114231453373,
      "time": 157,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11671728723"
    },
    {
      "job": 114231453389,
      "time": 180,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11672226024"
    }
  ],
  "_upstream": "https://github.com/BIMSBbioinfo/HDF5DataFrame",
  "_commit": {
    "id": "61c52cb4ee940e623363ac7fdaa67766ed6947fa",
    "author": "Artur-man <artur-man@hotmail.com>",
    "committer": "Artur-man <artur-man@hotmail.com>",
    "message": "bump version\n",
    "time": 1768945015
  },
  "_maintainer": {
    "name": "Artür Manukyan",
    "email": "artur-man@hotmail.com",
    "login": "artur-man",
    "description": "Bioinformatics Scientist at MDC BIMSB\n",
    "uuid": 39335576,
    "orcid": "0000-0002-0441-9517"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.5.0",
      "role": "Depends"
    },
    {
      "package": "DelayedArray",
      "role": "Depends"
    },
    {
      "package": "S4Vectors",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "BiocGenerics",
      "role": "Imports"
    },
    {
      "package": "h5mread",
      "role": "Imports"
    },
    {
      "package": "rhdf5",
      "role": "Imports"
    },
    {
      "package": "HDF5Array",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    }
  ],
  "_owner": "bimsbbioinfo",
  "_selfowned": true,
  "_usedby": 2,
  "_updates": [
    {
      "week": "2025-47",
      "n": 14
    },
    {
      "week": "2025-48",
      "n": 7
    },
    {
      "week": "2026-04",
      "n": 1
    }
  ],
  "_tags": [],
  "_topics": [
    "datarepresentation",
    "infrastructure",
    "software"
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "artur-man",
      "count": 40,
      "uuid": 39335576
    }
  ],
  "_userbio": {
    "uuid": 6482905,
    "type": "organization",
    "name": "BIMSB bioinformatics platform / Akalin Lab",
    "followers": 195,
    "description": "git repositories for the Akalin lab"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/HDF5DataFrame"
  },
  "_devurl": "https://github.com/bimsbbioinfo/hdf5dataframe",
  "_searchresults": 1,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/HDF5DataFrame.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_cranurl": false,
  "_exports": [
    "DelayedArray",
    "extract_array",
    "extractCOLS",
    "extractROWS",
    "HDF5ColumnSeed",
    "HDF5ColumnVector",
    "HDF5DataFrame",
    "path",
    "replaceCOLS",
    "replaceROWS",
    "type",
    "writeHDF5DataFrame"
  ],
  "_help": [
    {
      "page": "HDF5ColumnSeed",
      "title": "HDF5ColumnSeed",
      "topics": [
        "DelayedArray,HDF5ColumnSeed-method",
        "dim,HDF5ColumnSeed-method",
        "extract_array,HDF5ColumnSeed-method",
        "HDF5ColumnSeed",
        "HDF5ColumnVector",
        "path,HDF5ColumnSeed-method",
        "type,HDF5ColumnSeed-method"
      ]
    },
    {
      "page": "HDF5ColumnSeed-class",
      "title": "HDF5ColumnSeed Class",
      "topics": [
        "HDF5ColumnSeed-class"
      ]
    },
    {
      "page": "HDF5ColumnVector-class",
      "title": "HDF5ColumnVector Class",
      "topics": [
        "HDF5ColumnVector-class"
      ]
    },
    {
      "page": "HDF5DataFrame",
      "title": "HDF5-backed DataFrame",
      "topics": [
        "as.data.frame,HDF5DataFrame-method",
        "cbind,HDF5DataFrame-method",
        "HDF5DataFrame",
        "length,HDF5DataFrame-method",
        "names,HDF5DataFrame-method",
        "names<-,HDF5DataFrame-method",
        "nrow,HDF5DataFrame-method",
        "path,HDF5DataFrame-method",
        "rownames,HDF5DataFrame-method",
        "rownames<-,HDF5DataFrame-method",
        "[[,HDF5DataFrame-method",
        "[[<-,HDF5DataFrame-method"
      ]
    },
    {
      "page": "HDF5DataFrame-class",
      "title": "HDF5DataFrame Class",
      "topics": [
        "HDF5DataFrame-class"
      ]
    },
    {
      "page": "subsetting-utils",
      "title": "subsetting-utils",
      "topics": [
        "extractCOLS,HDF5DataFrame,ANY-method",
        "extractCOLS,HDF5DataFrame-method",
        "extractROWS,HDF5DataFrame,ANY-method",
        "replaceCOLS,HDF5DataFrame,ANY-method",
        "replaceCOLS,HDF5DataFrame-method",
        "replaceROWS,HDF5DataFrame,ANY-method",
        "replaceROWS,HDF5DataFrame-method",
        "subsetting-utils"
      ]
    },
    {
      "page": "writeHDF5DataFrame",
      "title": "writeHDF5DataFrame",
      "topics": [
        "writeHDF5DataFrame"
      ]
    }
  ],
  "_readme": "https://github.com/BIMSBbioinfo/HDF5DataFrame/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "BiocGenerics",
    "biocmake",
    "DelayedArray",
    "dir.expiry",
    "filelock",
    "generics",
    "h5mread",
    "HDF5Array",
    "IRanges",
    "lattice",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "rhdf5",
    "rhdf5filters",
    "Rhdf5lib",
    "S4Arrays",
    "S4Vectors",
    "SparseArray",
    "XVector"
  ],
  "_vignettes": [
    {
      "source": "HDF5DataFrame.Rmd",
      "filename": "HDF5DataFrame.html",
      "title": "HDF5DataFrame",
      "author": "Artur Manukyan",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "HDF5DataFrame",
        "HDF5DataFrame Methods",
        "Coercion",
        "Session info"
      ],
      "created": "2025-05-02 20:43:34",
      "modified": "2025-11-22 22:25:04",
      "commits": 11
    }
  ],
  "_score": 3.954242509439325,
  "_indexed": true,
  "_nocasepkg": "hdf5dataframe",
  "_universes": [
    "bimsbbioinfo",
    "artur-man"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.99.3",
      "date": "2026-10-10T14:09:54.000Z",
      "distro": "resolute",
      "commit": "61c52cb4ee940e623363ac7fdaa67766ed6947fa",
      "fileid": "https://r2.ropensci.org/496259382c98bc5187bd1ae9271192b87dbe474b5befbd208e7efc5613224c48",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bimsbbioinfo/actions/runs/38058004286"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.99.3",
      "date": "2026-10-10T14:09:29.000Z",
      "distro": "resolute",
      "commit": "61c52cb4ee940e623363ac7fdaa67766ed6947fa",
      "fileid": "https://r2.ropensci.org/b011cc3bc7ab0f3eb582e1cd707c4c701a71bb31998b8b742619393241f4ae9f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bimsbbioinfo/actions/runs/38058004286"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.99.3",
      "date": "2026-10-10T14:23:24.000Z",
      "commit": "61c52cb4ee940e623363ac7fdaa67766ed6947fa",
      "fileid": "https://r2.ropensci.org/29f99935c63961085b89fb152dc61135f3db3f9a662e39cc55ae37910c8f3c7b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bimsbbioinfo/actions/runs/38058004286"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.99.3",
      "date": "2026-10-10T14:25:22.000Z",
      "commit": "61c52cb4ee940e623363ac7fdaa67766ed6947fa",
      "fileid": "https://r2.ropensci.org/1de780b90d90d0b861b7447974a0329cda2f9bd88b810c9f863efca02964159e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bimsbbioinfo/actions/runs/38058004286"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.99.3",
      "date": "2026-10-10T14:09:31.000Z",
      "commit": "61c52cb4ee940e623363ac7fdaa67766ed6947fa",
      "fileid": "https://r2.ropensci.org/3669113d71be5b701e2cf6aec975c31eaca2094ec02a650a47fd663f8e9d1ffb",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bimsbbioinfo/actions/runs/38058004286"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.99.3",
      "date": "2026-10-10T14:08:39.000Z",
      "commit": "61c52cb4ee940e623363ac7fdaa67766ed6947fa",
      "fileid": "https://r2.ropensci.org/fb14b22243c77c8b8b24adbb6ea71314057006693d1be8148faca2a691d156c7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bimsbbioinfo/actions/runs/38058004286"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.99.3",
      "date": "2026-10-10T14:08:43.000Z",
      "commit": "61c52cb4ee940e623363ac7fdaa67766ed6947fa",
      "fileid": "https://r2.ropensci.org/421f76f8e67934d4290ac5b58172166f387b73b3d41c14f191d8f086cb765de6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bimsbbioinfo/actions/runs/38058004286"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.99.3",
      "date": "2026-10-10T14:09:04.000Z",
      "commit": "61c52cb4ee940e623363ac7fdaa67766ed6947fa",
      "fileid": "https://r2.ropensci.org/0690c43dbd9af1eb4d9bb99d3344ffb35f18eed60953cde9181548eb6a8b2ea7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bimsbbioinfo/actions/runs/38058004286"
    }
  ]
}