Package: VoltRon
Type: Package
Title: VoltRon for Spatial Omics Data Integration and Analysis
Version: 0.2.6
Depends: R (>= 4.6.0)
Author@R: person("Artür", "Manukyan", role=c("aut", "cre"),
        email="artur-man@hotmail.com",
        comment=c(ORCID="0000-0002-0441-9517")), person("Ella",
        "Bahry", role=c("aut")), person("Raj Prateek", "Rai",
        role=c("aut")), person("Wei-che", "Ko", role=c("aut")),
        person("Markus", "Landthaler", role=c("aut")), person("Altuna",
        "Akalin", role=c("aut"))
Author: Artür Manukyan, Ella Bahry, Raj Prateek Rai, Wei-Che Ko, Markus
        Landthaler, Altuna Akalin
Maintainer: Artür Manukyan <artur-man@hotmail.com>
Description: VoltRon is a spatial omic analysis toolbox for multi-omics
        integration using spatial image registration. VoltRon is
        capable of analyzing multiple types and modalities of
        spatially-aware datasets. VoltRon visualizes and analyzes
        regions of interests (ROIs), spots, cells, molecules and event
        tiles.
License: MIT + file LICENSE
SystemRequirements: OpenCV 4.8 (or higher): libopencv-dev (Debian,
        Ubuntu) or opencv-devel (Fedora)
Encoding: UTF-8
RoxygenNote: 7.3.3
biocViews:
Imports: utils, methods, grDevices, data.table, Matrix, S4Arrays,
        S4Vectors, ids, RcppAnnoy, RANN, igraph, dplyr, ggplot2,
        ggrepel, ggpubr, rjson, magick, EBImage, sp, rlang, shiny,
        shinyjs, stringr, BiocSingular, uwot, RCDT
LinkingTo: Rcpp, RcppArmadillo (>= 0.4)
Collate: 'RcppExports.R' 'zzz.R' 'allgenerics.R' 'allclasses.R'
        'annotation.R' 'assay.R' 'auxiliary.R' 'clustering.R'
        'conversion.R' 'data.R' 'deconvolution.R'
        'differentialexpression.R' 'image.R' 'import.R' 'integration.R'
        'interactive.R' 'metadata.R' 'objects.R' 'ondisk.R'
        'processing.R' 'registration.R' 'sample.R' 'spatial.R'
        'visualization.R'
Suggests: testthat (>= 3.0.0), DelayedArray, DelayedMatrixStats,
        BiocParallel, rhdf5, Rarr, ZarrArray, basilisk, reticulate,
        RBioFormats, VoltRonStore, BPCells, HDF5Array, HDF5DataFrame,
        ZarrDataFrame, ImageArray, viridisLite, SpatialExperiment,
        SingleCellExperiment, SummarizedExperiment, Seurat,
        SeuratObject, Giotto, DESeq2, MuSiC, spacexr, XML, sf,
        ComplexHeatmap, xlsx, reshape2, arrow, vitessceR, geojsonR,
        circlize, rstudioapi, ggforce, ggnewscale, anndataR, anndata,
        SimpleITK
Remotes: stla/RCDT, BIMSBbioinfo/VoltRonStore, bnprks/BPCells/r@v0.3.0,
        BIMSBbioinfo/VoltRon, BIMSBbioinfo/HDF5DataFrame,
        BIMSBbioinfo/ZarrDataFrame
Config/testthat/edition: 3
LazyData: true
LazyDataCompression: gzip
Config/pak/sysreqs: cmake libfftw3-dev libfreetype6-dev libglpk-dev
        libglu1-mesa-dev make libmagick++-dev gsfonts texlive
        libicu-dev libjpeg-dev libpng-dev libtiff-dev libuv1-dev
        libxml2-dev libopencv-dev libgl1-mesa-dev libssl-dev zlib1g-dev
Repository: https://bimsbbioinfo.r-universe.dev
Date/Publication: 2026-04-28 21:11:39 UTC
RemoteUrl: https://github.com/BIMSBbioinfo/VoltRon
RemoteRef: HEAD
RemoteSha: 0d063637ce999bed298b6668e4a14a3b9918eb14
NeedsCompilation: yes
Packaged: 2026-06-21 11:04:01 UTC; root