Package: BPCells
Title: Single Cell Counts Matrices to PCA
Version: 0.3.1
Authors@R: c(
    person(given = "Benjamin",
           family = "Parks",
           role = c("aut", "cre", "cph"),
           email = "bparks@alumni.stanford.edu",
           comment = c(ORCID = "0000-0002-0261-7472")),
    person("Immanuel", "Abdi", role = "aut"),
    person("Stanford University", role=c("cph", "fnd")),
    person("Genentech, Inc.", role=c("cph", "fnd")))
Description: > Efficient operations for single cell ATAC-seq fragments
        and RNA counts matrices. Interoperable with standard file
        formats, and introduces efficient bit-packed formats that allow
        large storage savings and increased read speeds.
License: Apache-2.0 or MIT
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
URL: https://bnprks.github.io/BPCells,
        https://github.com/bnprks/BPCells
LinkingTo: Rcpp, RcppEigen
Imports: methods, grDevices, magrittr, Matrix, Rcpp, rlang, tools,
        vctrs, lifecycle, stringr, tibble, dplyr (>= 1.0.0), tidyr,
        readr, ggplot2 (>= 3.4.0), scales, patchwork, scattermore,
        ggrepel, RColorBrewer, hexbin
Suggests: IRanges, GenomicRanges, matrixStats, igraph, RcppHNSW,
        RcppAnnoy
Depends: R (>= 4.0.0)
Config/Needs/website: pkgdown, devtools, uwot, irlba, RcppHNSW, igraph,
        BiocManager, bioc::BSgenome.Hsapiens.UCSC.hg38,
        github::GreenleafLab/motifmatchr,
        github::GreenleafLab/chromVARmotifs, png, magrittr
Config/pak/sysreqs: libicu-dev libx11-dev
Repository: https://bimsbbioinfo.r-universe.dev
Date/Publication: 2025-12-15 23:30:13 UTC
RemoteUrl: https://github.com/BIMSBbioinfo/BPCells
RemoteRef: HEAD
RemoteSha: c293a0a34e653c395c8e9bf9ed3133107324d7b7
RemoteSubdir: r
NeedsCompilation: yes
Packaged: 2026-06-24 08:59:02 UTC; root
Author: Benjamin Parks [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-0261-7472>),
  Immanuel Abdi [aut],
  Stanford University [cph, fnd],
  Genentech, Inc. [cph, fnd]
Maintainer: Benjamin Parks <bparks@alumni.stanford.edu>